Potent synergy and sustained bactericidal activity of polymyxins combined with Gram-positive only class of antibiotics versus four Gram-negative bacteria

Background Gram-negative bacteria (GNB) are becoming increasingly resistant to a wide variety of antibiotics. There are currently limited treatments for GNB, and the combination of antibiotics with complementary mechanisms has been reported to be a feasible strategy for treating GNB infection. The inability to cross the GNB outer membrane (OM) is an important reason that a broad spectrum of Gram-positive only class of antibiotics (GPOAs) is lacking. Polymyxins may help GPOAs to permeate by disrupting OM of GNB. Objective To identify what kind of GPOAs can be aided to broaden their anti-GNB spectrum by polymyxins, we systematically investigated the synergy of eight GPOAs in combination with colistin (COL) and polymyxin B (PMB) against GNB in vitro. Methods The synergistic effect of COL or PMB and GPOAs combinations against GNB reference strains and clinical isolates were determined by checkerboard tests. The killing kinetics of the combinations were assessed using time-kill assays. Results In the checkerboard tests, polymyxins-GPOAs combinations exert synergistic effects characterized by species and strain specificity. The synergistic interactions on P. aeruginosa strains are significantly lower than those on strains of A. baumannii, K. pneumoniae and E. coli. Among all the combinations, COL has shown the best synergistic effect in combination with dalbavancin (DAL) or oritavancin (ORI) versus almost all of the strains tested, with FICIs from 0.16 to 0.50 and 0.13 to < 0.28, respectively. In addition, the time-kill assays demonstrated that COL/DAL and COL/ORI had sustained bactericidal activity. Conclusions Our results indicated that polymyxins could help GPOAs to permeate the OM of specific GNB, thus showed synergistic effects and bactericidal effects in the in vitro assays. In vivo combination studies should be further conducted to validate the results of this study. Supplementary Information The online version contains supplementary material available at 10.1186/s12941-024-00720-4.


Introduction
Antimicrobial resistance is a growing problem and one of the most serious threats facing humanity today.At the same time, GNB pathogens hold a significant position in the list of priority pathogens for antibiotic resistance published by the World Health Organization (WHO) in 2017 [1].In hospitals, the number of antibiotics to treat Gram-negative resistant strains is becoming increasingly scarce and limited due to the emergence of multidrug-resistant (MDR), extensively-resistant (XDR) and pandrug-resistant (PDR) isolates.Polymyxins were developed in the 1940s, and the clinically marketed products are mainly PMB and COL sulfate and mesylate [2].As cationic lipopeptide antibiotics, polymyxins have electrostatic interactions with negatively charged lipid A on lipopolysaccharide (LPS), leading to depolarization and disruption of the GNB outer membrane (OM), followed by cell death through osmotic lysis and the production of toxic hydroxyl radicals [3].However, the intravenous formulations of COL and PMB were gradually abandoned by the early 1980s due to the reported high incidence of nephrotoxicity and the availability of alternative antibiotics with better safety profiles.Since it is difficult to develop new classes of antibiotics, polymyxins are reconsidered the last alternative for the treatment of GNB [4].However, polymyxins monotherapy should be avoided in most cases [5].The use of polymyxins combination therapy could be a favorable approach for decreasing the required dosage of polymyxins and ultimately leading to a reduction in nephrotoxicity.
The OM of GNB is the main cause of inactivity to a host of GPOAs [6].Although GPOAs are not active against GNB alone, their activity is likely to be improved if used in combination with OM disruption agents [7][8][9].GPOAs, mainly including glycopeptides class [vancomycin (VA), teicoplanin (TEC)), oxazolidinones class (linezolid (LZD), tedizolid (TZD), and contezolid (CZD)], lipoglycopeptides class (dalbavancin (DAL), oritavancin (ORI)) and cyclic lipopeptides (daptomycin (DAP)) have difficulty entering into the OM of GNB and binding to their intracellular target sites.Most antibacterial targets are highly conserved across Gram-positive bacteria and GNB, and a lack of compound entry has been demonstrated by the GNB intracellular accumulation analysis by liquid chromatography with tandem mass spectroscopy (LC-MS/MS) [10].In addition, several studies have shown that GNB with permeabilized outer membranes or impaired efflux pumps are vulnerable to GPOAs [11,12].This makes it reasonable to assume that the permeabilizing properties of polymyxins could help GPOAs to penetrate the OM of GNB.However, variations in lipopolysaccharide structure, porins and efflux pumps of different GNBs affect the effects of polymyxins on GPOAs; in this regard, it is still unclear which GPOAs that polymyxins might better aid in penetrating which type of GNB.
To solve the above problem, in this study, we assessed the in vitro synergistic activity of combinations of polymyxins and GPOAs against the following GNBs noted on the WHO's priority list: Acinetobacter baumannii (A.baumannii), Escherichia coli (E.coli), Klebsiella pneumoniae (K.pneumoniae), and Pseudomonas aeruginosa (P.aeruginosa).

Minimal inhibitory concentration (MIC) assays
The MICs of polymyxins and GPOAs were determined in triplicate using the broth microdilution method and according to the Clinical and Laboratory Standards Institute (CLSI) 2020 guidelines [14].All experiments were conducted using freshly prepared Cation-Adjusted Mueller-Hinton Broth (CAMHB), which was purchased from Qingdao hopebiol Biotechnology Co., Ltd (Shandong, China).100 μL of inoculum was adjusted to roughly 5 × 10 5 CFU/mL, and the microtiter plates were visually observed after incubation for 16-20 h at 37 ℃.The breakpoints were interpreted according to CLSI 2020.

Checkerboard assays
The synergy test of polymyxins with GPOAs was performed by standard checkerboard method using 96-well microtiter plates.Each antibiotic was prepared by doubling dilutions of GPOAs (0-512 μg/mL) in the vertical wells and polymyxins (0-16 μg/mL) in the horizontal wells.The final concentration of bacterial suspension was adjusted to approximately 5 × 10 5 CFU/mL in a 100 μL final volume.The plates were incubated at 37 ℃ for 16-20 h.Assays were performed in triplicate for each isolate.The fractional inhibitory concentration index (FICI) was calculated for each combination with the following equation: FICI = FIC A + FIC B , where FIC A = MIC of drug A in combination/MIC of drug A alone, and FIC B = MIC of drug B in combination/MIC of drug B alone.The interpretation of the FICI was as follows: FICI ≤ 0.5, synergism; FICI > 0.5 and ≤ 4, indifference; FICI > 4, antagonism [15].

Time-kill assays
This experiment was conducted in triplicate to evaluate the bactericidal activity of both agents and their combinations.Based on the MIC results, a final concentration of either 0.5 or 1 µg/mL (1 × MIC) was chosen for COL.DAL and ORI were both added at 20 µg/mL to achieve concentrations in plasma [16].100 µL of the 0.5 McFarland GNB suspension was added to 5 mL of CAMHB at 37℃ until it reached log-phase growth (approximately 4 h).The culture was then adjusted to the turbidity of a 1.0 McFarland in CAMHB, and 100 µL was added to each of the antimicrobial solutions.Tubes without antibiotics were used as growth controls.Colony counts were observed at 0, 2, 4, 8, 18 and 24 h.A tenfold dilution series was prepared in CAMHB and a 10 μL drop of each dilution was transferred to Mueller-Hinton plates and incubated overnight at 37 °C in ambient air for 16-20 h.Bactericidal activity was defined as a ≥ 3 log 10 reduction in colony count compared with the bacterial concentration of starting inoculum.Synergy was defined as a ≥ 2 log 10 decrease in colony count compared to the effect of the most active single agent after 24 h [17].

Antimicrobial susceptibility and synergy testing by checkerboard assays
As shown in Table S1, four of these strains were MDR isolates, six were XDR isolates and two were PDR isolates.All strains were susceptible to COL except P. aeruginosa 235875 and K. pneumoniae 418015 and 235094.
Regarding β-lactam antibiotics such as cephalosporins, carbapenems and monobactam, all clinical strains exhibited nearly complete resistance.For aminoglycosides, four strains of K. pneumoniae demonstrated resistance, whereas the other GNB strains exhibited a mix of sensitive and resistant strains.All strains displayed either a resistant or intermediate phenotype when they were exposed to fluoroquinolones.Sensitive strains were predominated for the tetracyclines, particularly for tigecycline.Conversely, almost all strains exhibited resistance to sulfonamides.

Time-kill assays
Using time-kill methodology with colistin-susceptible isolates, Fig. 1 shows the synergistic effect of COL in combination with DAL or ORI against three strains (E. coli 222061, A. baumannii 316039, and K. pneumoniae 327004).Exposure to DAL or ORI alone had no inhibitory effect on bacterial growth, although COL alone at 1 × MIC was initially bactericidal against all strains tested, there was rapid regrowth after a maximum of 8 h.The combination of DAL or ORI with COL also resulted in rapid bactericidal effects, but regrowth did not occur even after 24 h of incubation, except for K. pneumoniae 327004 treated with DAL and COL.

Discussion
The global spread of drug-resistant GNB, such as carbapenemase-producing Enterobacteriaceae and A. baumannii, has prompted recurrent requests for research and development (R&D) of new antibiotics.Despite the urgency for new antibiotics, the global antibiotic pipeline is meagre.Recognizing this crisis, a review of previously unpopular antibiotics and unconventional combinations are certainly necessary and feasible.
The ability of polymyxins to disturb outer membrane permeability has been previously used to investigate the potential for synergy of colistin in combination with GPOAs, such as VA [18], DAP [19], LZD [17,20] and TEC [21].However, most of these studies have only investigated the synergistic effect of a GPOA in combination with polymyxins on one kind of bacteria, and polymyxins have largely chosen colistin rather than polymyxin B. In order to reduce the nephrotoxicity of polymyxins by reducing their dose and to broaden the antibacterial spectrum of GPOAs, a systematic study is urgently needed to compare the synergistic effect of all GPOAs in combination with polymyxins (colistin and polymyxin B) on four kinds of clinically common GNB with severe antibiotic resistance.
From the perspective of each bacterial strain, when considering the spectrum of synergistic effects for different polymyxins/GPOAs combinations, we can draw the following conclusions: for strains belonging to the same type of bacteria, the differences in the spectrum of synergistic efficacy between the reference strain (wild type drug-sensitive strain) and clinical drug-resistant strain are not greater than those between clinical drug-resistant strains; the synergistic effects on P. aeruginosa strains are significantly lower than those on strains of A. baumannii, K. pneumoniae and E.coli; as to K. pneumoniae, it appears that its resistance to polymyxins does not affect the synergistic effects exhibited by specific polymyxins/ GPOAs combinations.
Although the synergies between GPOAs and polymyxins was still species and strain specific, these data suggest that the combination of GPOAs-polymyxins could be a useful option for the treatment of complicated GNB infections.Considering GPOAs have potent and rapidly bactericidal activity against Gram-positive bacteria, which may be advantageous when mixed Gram-positive and Gram-negative infections are presented or suspected.As some of GPOAs administration alone is also associated with significant nephrotoxicity, there may be concerns over its use in combination with polymyxins.Nevertheless, it should be noticed that the concentrations of polymyxins required to mediate GPOAs synergy in vitro are relatively low, which may reduce the risk of developing renal impairment if the antibiotics are given together.As reported in the literature [18], Wareham et al. have identified a number of patients with MDR A. baumannii who received colistin with concomitant vancomycin therapy for the treatment of Gram-positive bacteria-associated infections without apparent nephrotoxicity.Concerns over GPOAs-polymyxins renal impairment may also be less important if polymyxins were to be administered in aerosolized form.Nebulized polymyxins have been increasingly used in the treatment of GNB respiratory tract infections in several diseases (e.g., ventilator-associated pneumonia and chronic cystic fibrosis infections), but there is little evidence to demonstrate that they cause nephrotoxicity when delivered via a nebulizer.
We were unable to demonstrate synergy versus polymyxins resistant isolate in the time-kill study (data not shown), most likely due to the inability of polymyxins to disrupt the OM with rapidly changing components of the strain.Of particular interest in the checkerboard assay, synergy and bactericidal activities were demonstrated for COL/VA, COL/CZD, PMB/VA and PMB/CZD at 0.25 × or 0.5 × MIC against K. pneumoniae 418015, but not against colistin susceptible isolates of K. pneumoniae.As observed and previously suggested by Duval et al. [22], the presence of higher proportions of heterogeneous subpopulations resistant to colistin in K. pneumoniae 418015 may favor the OM penetration and activity of the unconventional antibiotics tested.
Our results demonstrated that the synergistic spectrum of polymyxins-GPOAs is species and strain specific.As previously published by Zgurskaya et al. [23], the presence of the OM and a plethora of active efflux pumps determine the amount of antibiotic accumulation in the GNB, which is positively correlated with the activity of the antibiotic.Different GNB pathogens differ dramatically in their permeability barriers, with the OM playing the dominant role in E. coli and P. aeruginosa but efflux pump dominating in A. baumannii, which results in huge differences in the accumulation of compounds with different chemical structures and even of the same chemotype in GNB.Consistent with the conclusion that in P. aeruginosa, all antibiotics were impacted by both the OM and efflux, while in A. baumannii and E. coli, the contributions of the OM and efflux were antibiotic specific.We also found that the synergistic interactions on P. aeruginosa strains are significantly lower than those on strains of A. baumannii, K. pneumoniae and E. coli.Polymyxins disrupt the OM structure of GNB and the efflux pump in it, thereby facilitating the entry of GPOAs into GNB through different permeation pathways and reducing efflux to exert different antibacterial effects.
Although our data suggest and somewhat confirm that polymyxins-GPOAs combinations might result in synergistic and bactericidal activity, but this remains to be confirmed.A pharmacokinetic study will be needed to assess how best to dose and monitor the two antibiotics in combination before any firm conclusions can be drawn.Further investigations of polymyxin-GPOAs combinations in animal infection models and patients are warranted to optimize the target species and strains and administration dosage.A successful application of polymyxin-GPOAs combination in the clinic requires collaboration between clinical microbiologists and clinicians, starting with rapid in vitro testing (Etest method would be an appropriate option) of the antibacterial efficacy of the combination on the strains from the patient by clinical microbiologist, followed by clinician selection of the appropriate combination and dose based on in vitro susceptibility results and in vivo data.

Conclusion
In summary, we have provided in vitro evidence that polymyxin-GPOAs combinations have potential synergistic efficacy against four GNB pathogens of high clinical importance.With very few new antibiotics likely to become available for the treatment of severe resistant GNB in the next 5 to 10 years, polymyxin-GPOAs combinations could be considered potential therapies that can help bridge the R&D gap.Further in vivo and clinical studies will be needed to support our results.

Fig. 1
Fig. 1 Time-kill studies of colistin alone and in combination with dalbavancin and oritavancin.Data were obtained from clinical isolates of A. baumannii, E. coli and K. pneumoniae